Anderson, M. J., 2001. Permutation tests for univariate or multivariate analysis of variance and regression. Can. J. Fish. Aquatic Sci. 58: 626-639.

Barton, N. H. & Slatkin, M., 1986. A quasi-equilibrium theory of the distribution of rare alleles in a subdivided population. Heredity 56: 409-415.

Black, IV, W. C. & Krafsur, E. S., 1985. A FORTRAN program for the calculation and analysis of two-locus linkage disequilibrium coeffcients. Theor. Appl. Genet. 70: 491-496.

Brookfield, J. F. Y., 1996. A simple new method for estimating null allele frequency from heterozygote deficiency. Mol. Ecol. 5: 453-455.

Brooks, S. & Gelman, A., 1998. General methods for monitoring convergence of iterative simulations. J. Computational Graphical Stat. 7: 434-455.

Chakraborty, R., de Andrade, M., Daiger, S. & Budowle, B., 1992. Apparent heterozygote deficiencies observed in DNA typing data and their implications in forensic applications. Ann. Hum. Genetics 56: 45-57.

Cockerham, C. C., 1973. Analyses of gene frequencies. Genetics 74: 679-700.

Cockerham, C. C. & Weir, B. S., 1987. Correlations, descent measures: drift with migration and mutation. Proc. Natl. Acad. Sci. U. S. A. 84: 8512-8514.

Cox, D. R. & Hinkley, D. V., 1974. Theoretical statistics. Chapman & Hall, London.

Dempster, A. P., Laird, N. M. & Rubin, D. B., 1977. Maximum Likelihood from incomplete data via the EM algorithm (with discussion). J. R. Stat. Soc. B 39: 1-38.

DiCiccio, T. J. & Efron, B., 1996. Bootstrap confidence intervals (with discussion). Stat. Sci. 11: 189-228.

Felsenstein, J., 2005. PHYLIP (Phylogeny Inference Package) version 3.6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle.

Fisher, R. A., 1935. The logic of inductive inference (with discussion). J. R. Stat. Soc. 98: 39-82.

Garnier-Géré, P. & Dillmann, C., 1992. A computer program for testing pairwise linkage disequilibria in subdivided populations. J. Hered. 83: 239.

Goudet, J., 1995. FSTAT (Version 1.2): A computer program to calculate Fstatistics. J. Hered. 86: 485-486.

Goudet, J., Raymond, M., de Meeus, T. & Rousset, F., 1996. Testing differentiation in diploid populations. Genetics 144: 1931-1938.

Guo, S. W. & Thompson, E. A., 1992. Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics 48: 361-372.

Haldane, J. B. S., 1954. An exact test for randomness of mating. Journal of Genetics 52: 631-635.

Hartl, D. L. & Clark, A. G., 1989. Principles of population genetics. Sinauer, Sunderland, Mass., 2nd edn.

Hastings, W. K., 1970. Monte Carlo sampling methods using Markov chains and their applications. Biometrika 57: 97-109.

Kalinowski, S. T. & Taper, M. L., 2006. Maximum likelihood estimation of the frequency of null alleles at microsatellite loci. Conserv. Genetics 7:991-995.

Leblois, R., Estoup, A. & Rousset, F., 2003. Influence of mutational and sampling factors on the estimation of demographic parameters in a "continuous" population under isolation by distance. Mol. Biol. Evol. 20: 491-502.

Lehmann, E. L., 1994. Testing statistical hypotheses. Chapman & Hall, New York, 2nd edn.

Levene, H., 1949. On a matching problem arising in genetics. Annals of Mathematical Statistics 20: 91-94.

Loiselle, B. A., Sork, V. L., Nason, J. & Graham, C., 1995. Spatial genetic structure of a tropical understory shrub Psychotria oficinalis (Rubiaceae). Am. J. Bot. 82: 1420-1425.

Louis, E. J. & Dempster, E. R., 1987. An exact test for Hardy-Weinberg and multiple alleles. Biometrics 43: 805-811.

Mantel, N., 1967. The detection of disease clustering and a generalized regression approach. Cancer Research 27: 209-220.

Matsumoto, M. & Nishimura, T., 1998. Mersenne Twister: A 623-dimensionally equidistributed uniform pseudorandom number generator. ACM Trans. on Modeling and Computer Simulation 8: 3-30.

Mehta, C. R. & Patel, N. R., 1983. A network algorithm for performing Fisher's exact test in r x c contingency tables. J. Am. Stat. Soc. 78: 427-434.

Michalakis, Y. & Excoffier, L., 1996. A generic estimation of population subdivision using distances between alleles with special interest to microsatellite loci. Genetics 142: 1061-1064.

Oden, N. L. & Sokal, R. R., 1992. An investigation of three-matrix permutation tests. J. Classif. 9: 275-290.

Ohta, T., 1982. Linkage disequilibrium due to random genetic drift in finite subdivided populations. Proc. Natl. Acad. Sci. U. S. A. 79: 1940-1944.

Raufaste, N. & Rousset, F., 2001. Are partial Mantel tests adequate? Evolution 55: 1703-1705.

Raymond, M. & Rousset, F., 1995a. An exact test for population differentiation.Evolution 49: 1283-1286.

Raymond, M. & Rousset, F., 1995b. GENEPOP Version 1.2: population genetics software for exact tests and ecumenicism. J. Hered. 86: 248-249.

Robertson, A. & Hill, W. G., 1984. Deviations from Hardy-Weinberg proportions: sampling variances and use in estimation of inbreeding coefficients. Genetics 107: 703-718.

Rousset, F., 1996. Equilibrium values of measures of population subdivision for stepwise mutation processes. Genetics 142: 1357-1362.

Rousset, F., 1997. Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics 145: 1219-1228.

Rousset, F., 2000. Genetic differentiation between individuals. J. Evol. Biol. 13:58-62.

Rousset, F., 2002a. Inbreeding and relatedness coefficients: what do they measure? Heredity 88: 371-380.

Rousset, F., 2002b. Partial Mantel tests: reply to Castellano and Balletto. Evolution 56: 1874-1875.

Rousset, F., 2007. Inferences from spatial population genetics. In: Handbook of statistical genetics (D. J. Balding, M. Bishop & C. Cannings, eds.), pp. 945-979. Wiley, Chichester, U.K., 3rd edn.

Rousset, F., 2008. Genepop'007: a complete reimplementation of the Genepop software for Windows and Linux. Mol. Ecol. Resources 8: 103-106.

Rousset, F. & Leblois, R., 2007. Likelihood and approximate likelihood analyses of genetic structure in a linear habitat: performance and robustness to model mis-specification. Mol. Biol. Evol. 24: 2730-2745.

Rousset, F. & Raymond, M., 1995. Testing heterozygote excess and deficiency. Genetics 140: 1413-1419.

Rousset, F. & Raymond, M., 1997. Statistical analyses of population genetic data: old tools, new concepts. Trends Ecol. Evol. 12: 313-317.

Slatkin, M., 1995. A measure of population subdivision based on microsatellite allele frequencies. Genetics 139: 457-462.

Swofford, D. L. & Selander, R. B., 1989. BIOSYS-1. A Computer Program for the Analysis of Allelic Variation in Population Genetics and Biochemical Systematics. Release 1.7. Illinois Natural History Survey, Champaign.

Vekemans, X. & Hardy, O. J., 2004. New insights from fine-scale spatial genetic structure analyses in plant populations. Mol. Ecol. 13: 921-934.

Watts, P. C., Rousset, F., Saccheri, I. J., Leblois, R., Kemp, S. J. & Thompson, D. J., 2007. Compatible genetic and ecological estimates of dispersal rates in insect (Coenagrion mercuriale: Odonata: Zygoptera) populations: analysis of 'neighbourhood size' using a more precise estimator. Mol. Ecol. 16: 737-751.

Weir, B. S., 1996. Genetic Data Analysis II. Sinauer, Sunderland, Mass.

Weir, B. S. & Cockerham, C. C., 1984. Estimating F-statistics for the analysis of population structure. Evolution 38: 1358-1370.

Last Modified on September 29, 2009 by Eleanor Morgan

[Genepop Home Page]